misc.cpp File Reference

#include "libc.h"
#include "types.h"
#include "misc.h"
#include "args.h"

Defines
#define	_XOPEN_SOURCE
Functions
void	fatal (const char *msg)
static void	print_argv0 (void)
void	fatalf (const char *fmt,...)
void	fatalfr (const char *fmt,...)
void	debugf (const char *fmt,...)
void	debugff (const char *fmt,...)
FILE *	ckopen (const char *name, const char *mode)
void *	ckalloc (size_t amount)
void *	ckallocz (size_t amount)
void *	ckfree (void *p)
bool	same_string (const char *s, const char *t)
char *	copy_string (const char *s)
char *	copy_substring (const char *s, int n)
long	ckftell (FILE *f)
int	ckfseek (FILE *f, long i, int m)
void *	ckrealloc (void *p, size_t size)
FILE *	ckpopen (const char *name, const char *mode)
void	ckpclose (FILE *fp)
Variables
static const char	rcsid []
int	psublast_debug = 0

---

Define Documentation

#define _XOPEN_SOURCE

---

Function Documentation

void* ckalloc

(

size_t

amount

)

References fatalf().

Referenced by add_word(), align_get_dist(), align_path(), bld_table(), ckallocz(), copy_string(), copy_substring(), exon_cores(), extend_bw(), extend_fw(), extend_hit(), get_strargval(), greedy(), link_to_data_list(), new_exon(), new_splice(), pluri_align(), print_align_blk(), print_align_lat(), splice(), splice_acceptor(), splice_acceptor_uni(), splice_donor(), splice_donor_uni(), Xextend_bw(), and Xextend_fw().

void* ckallocz

(

size_t

amount

)

References ckalloc().

void* ckfree

(

void *

p

)

int ckfseek	(	FILE *	f,
		long	i,
		int	m
	)

References fatalfr().

long ckftell

(

FILE *

f

)

References fatalfr().

FILE* ckopen	(	const char *	name,
		const char *	mode
	)

References fatalfr().

void ckpclose

(

FILE *

fp

)

References fatalfr().

FILE* ckpopen	(	const char *	name,
		const char *	mode
	)

References fatalfr().

void* ckrealloc	(	void *	p,
		size_t	size
	)

References fatal().

char* copy_string

(

const char *

s

)

References ckalloc().

char* copy_substring	(	const char *	s,
		int	n
	)

References ckalloc().

void debugf	(	const char *	fmt,
			...
	)

References print_argv0(), and psublast_debug.

void debugff	(	const char *	fmt,
			...
	)

References print_argv0(), and psublast_debug.

void fatal

(

const char *

msg

)

References fatalf().

Referenced by cds_range(), check_consistency_intron_ori(), ckrealloc(), complement_exons(), exon_cores(), find_ends(), find_previous(), IDISPLAY(), main(), print_align_header_n(), print_exons(), print_pipmaker_exons(), stepct(), and sync_slide_intron().

void fatalf	(	const char *	fmt,
			...
	)

References print_argv0().

Referenced by ck_argc(), ckalloc(), ckargs(), fatal(), and is_DNA().

void fatalfr	(	const char *	fmt,
			...
	)

References print_argv0().

Referenced by ckfseek(), ckftell(), ckopen(), ckpclose(), and ckpopen().

static void print_argv0

(

void

)

[static]

References argv0.

Referenced by debugf(), debugff(), fatalf(), and fatalfr().

bool same_string	(	const char *	s,
		const char *	t
	)

---

Variable Documentation

int psublast_debug = 0

Referenced by debugf(), and debugff().

const char rcsid[] [static]

Initial value:

"$Id: misc.cpp,v 1.1.1.1 2007-07-13 03:44:06 kzhou Exp $"