mlocalSDB.cpp File Reference

#include <stdio.h>
#include "dynamicaln.h"
#include <string.h>

Functions
int	main (int argc, char *argv[])

---

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References SEQALN_RESULTS::bestS, SEQALN_CONSTANTS::btype, SEQALN_CONSTANTS::cutoff, FULL, gen_align(), LINEAR, LOCAL, localS(), lsdeclump(), MATRIX, SEQALN_CONSTANTS::memuse, SEQALN_CONSTANTS::mtype, SEQALN_RESULTS::naligns, newmem(), parseargs_str(), print_trace(), SEQALN_CONSTANTS::ptype, results_init(), rpt_align(), rpt_scores(), SEQALN_CONSTANTS::rptalign, SEQALN_CONSTANTS::rptboth, SEQALN_CONSTANTS::rptmat, SEQALN_CONSTANTS::rptscore, SEQALN_CONSTANTS::rpttrace, seq1, seq2, SIMILARITY, SQUARE, SEQALN_IO::STDERR, SEQALN_IO::STDIN, SEQALN_IO::STDOUT, SEQALN_CONSTANTS::stype, trace(), and SEQALN_CONSTANTS::traceupper.