pfsdeclump.c File Reference

#include "seqaln.h"

Functions
	pfsdeclump (struct SEQALN_SEQUENCE *seq, struct SEQALN_PROFILE *pro, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

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Function Documentation

pfsdeclump	(	struct SEQALN_SEQUENCE *	seq,
		struct SEQALN_PROFILE *	pro,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_RESULTS::aligned, SEQALN_PROFILE::alpha, SEQALN_CONSTANTS::alpha, SEQALN_RESULTS::bestS, SEQALN_RESULTS::bestSi, SEQALN_RESULTS::bestSj, SEQALN_CONSTANTS::beta, SEQALN_CONSTANTS::deltafn, E, SEQALN_RESULTS::F, F, gap(), SEQALN_PROFILE::len, markdiag(), max, max3(), SEQALN_RESULTS::naligns, newmem(), SEQALN_CONSTANTS::palpha, SEQALN_CONSTANTS::pbeta, pgap(), and SEQALN_RESULTS::S.

Referenced by main().