strformat.cpp File Reference

#include "strformat.h"
#include <string.h>
#include <ctype.h>
#include <stdlib.h>
#include <assert.h>

Functions
void	upper (const char lo[], char *up)
void	rmsp1 (const char a[], char b[])
void	rmsp (char a[])
void	rmdquote (char a[])
void	rpldquote (char a[], const char r)
int	isName (char *n)
void	rmtsp (char a[])
void	newline (istream &ins)
void	dlc (char a[])
int	getNumber (char *&ptr)
int	itoa (unsigned int n, char a[])
int	substr (const char ln[], int s, char sub[])
int	substr (const char ln[], int s, int f, char sub[])
void	firstwd (const char ln[], char sub[], char term)
void	append (char *&head, const char *tail, int &len, int &maxlen, int incr)
void	append (char *&head, const char *tail, int &len, int &maxlen)

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Function Documentation

void append	(	char *&	head,
		const char *	tail,
		int &	len,
		int &	maxlen
	)

void append	(	char *&	head,
		const char *	tail,
		int &	len,
		int &	maxlen,
		int	incr
	)

Referenced by Alnview::namesToString(), Alnview::readFile(), feature::readloc(), kzseq::readSeq(), and Alnview::toString().

void dlc

(

char

a[]

)

delete last character from an C-string a

Referenced by head::getHead().

void firstwd	(	const char	ln[],
		char	sub[],
		char	term
	)

Referenced by head::loadSeqInfo().

int getNumber

(

char *&

ptr

)

Conversion to other types such as integer, double

Referenced by Date::gbstr(), and feature::readloc().

int isName

(

char *

n

)

int itoa	(	unsigned int	n,
		char	a[]
	)

reverse of atoi convert into an array of char

Referenced by seqinfo::getcntstr(), main(), feature::wjoinseg(), feature::writeAllele(), feature::writeRNA(), feature::writeSource(), and feature::writeToken().

void newline

(

istream &

ins

)

void rmdquote

(

char

a[]

)

Referenced by head::getHead().

void rmsp

(

char

a[]

)

void rmsp1	(	const char	a[],
		char	b[]
	)

References aa.

void rmtsp

(

char

a[]

)

Referenced by rmsp().

void rpldquote	(	char	a[],
		const char	r
	)

Referenced by head::getHead().

int substr	(	const char	ln[],
		int	s,
		int	f,
		char	sub[]
	)

picks non-whitespace substring from s to f returns the length of the substring s starting index, f ending index (inclusive)

int substr	(	const char	ln[],
		int	s,
		char	sub[]
	)

Extraction picks substring from index s to a white space of ln, copy to sub sub is set to the substring without any whitespace at beginning or end. If from s to the end is all whitespace, then return 0 and sub is set to empty C string. returns strlen of the substr, 0 if no substr, or substr is empty s is 0-based index

Referenced by acronymWithTag(), Book::Book(), feature::getTaxid(), head::loadSeqInfo(), main(), Refreader::newRef(), locseg::parse(), Reference::parseJournal(), RangeChain::RangeChain(), Gsubreader::read(), readandstoreSam(), feature::readloc(), feature::RNAdump(), prt::writeAce(), and feature::writeAceDNA().

void upper	(	const char	lo[],
		char *	up
	)

Referenced by align_get_dist(), align_path(), exon_cores(), extend_bw(), extend_fw(), Date::smtoi(), Xextend_bw(), and Xextend_fw().