prnt.cpp File Reference

#include "libc.h"
#include "types.h"
#include "args.h"
#include "dna.h"
#include "misc.h"
#include "prnt.h"

Defines
#define	ckprintf   (void)printf
Enumerations
enum	{ BUFSIZE = 128 }
Functions
static void	print_align_header_n (kzseq &seq1, kzseq &seq2, argv_scores_t *ds, int n)
void	print_align_header (kzseq &seq1, kzseq &seq2, argv_scores_t *ds)
void	print_align (int score, const char *seq1, const char *seq2, int beg1, int end1, int beg2, int end2, int *S)
Variables
static const char	rcsid []
static int	offset1
static int	offset2

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Define Documentation

#define ckprintf   (void)printf

Referenced by print_align(), and print_align_header_n().

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Enumeration Type Documentation

anonymous enum

Enumerator:

BUFSIZE

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Function Documentation

void print_align	(	int	score,
		const char *	seq1,
		const char *	seq2,
		int	beg1,
		int	end1,
		int	beg2,
		int	end2,
		int *	S
	)

References ckprintf, M, N, offset1, offset2, P, and run.

Referenced by print_align_blk().

void print_align_header	(	kzseq &	seq1,
		kzseq &	seq2,
		argv_scores_t *	ds
	)

References print_align_header_n().

Referenced by main().

static void print_align_header_n	(	kzseq &	seq1,
		kzseq &	seq2,
		argv_scores_t *	ds,
		int	n
	)			[static]

References ck_argc(), ckprintf, argv_scores::E, F, fatal(), fprintf_argv(), get_argval(), kzseq::getHeader(), kzseq::getName(), argv_scores::I, argv_scores::M, argv_scores::O, offset1, offset2, kzseq::seqlen(), T, and argv_scores::V.

Referenced by print_align_header().

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Variable Documentation

int offset1 [static]

Referenced by print_align(), and print_align_header_n().

int offset2 [static]

Referenced by print_align(), and print_align_header_n().

const char rcsid[] [static]

Initial value:

"$Id: prnt.cpp,v 1.1.1.1 2007-07-13 03:44:06 kzhou Exp $"