qcmultialn.cc File Reference

#include "alignment.h"
#include <iostream>
#include <fstream>
#include <string>
#include <dirent.h>
#include <unistd.h>
#include "libpq++.h"
#include <sstream>
#include "../cluster/scorepair.h"

Functions
void	qualityControl (alignment &aln, ostream &ou, float base)
void	qcdir (const char *d, float base, float top, PgDatabase &pgdb)
void	usage (float idb, float top)
void	updateAlignment (PgDatabase &pgdb, alignment *aln, quality Q)
void	addNewCluster (PgDatabase &pgdb, const string &clusterid, scorepair &sp)
int	main (int argc, char *argv[])
Variables
int	clusterIdCnt

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Function Documentation

void addNewCluster	(	PgDatabase &	pgdb,
		const string &	clusterid,
		scorepair &	sp
	)

int main	(	int	argc,
		char *	argv[]
	)

References bad, best, clusterIdCnt, good, ifstream(), partial_good, Q, qcdir(), and usage.

void qcdir	(	const char *	d,
		float	base,
		float	top,
		PgDatabase &	pgdb
	)

void qualityControl	(	alignment &	aln,
		ostream &	ou,
		float	base
	)

void updateAlignment	(	PgDatabase &	pgdb,
		alignment *	aln,
		quality	Q
	)

void usage	(	float	idb,
		float	top
	)

---

Variable Documentation

int clusterIdCnt