results_init.c File Reference

#include <stdio.h>
#include <malloc.h>
#include "seqaln.h"

Functions
int	results_init (SEQALN_SEQUENCE *seq1, SEQALN_SEQUENCE *seq2, SEQALN_CONSTANTS *scoring, SEQALN_RESULTS *results, SEQALN_IO *io)

---

Function Documentation

int results_init	(	SEQALN_SEQUENCE *	seq1,
		SEQALN_SEQUENCE *	seq2,
		SEQALN_CONSTANTS *	scoring,
		SEQALN_RESULTS *	results,
		SEQALN_IO *	io
	)

References SEQALN_RESULTS::aligned, SEQALN_CONSTANTS::alpha, SEQALN_RESULTS::best, SEQALN_RESULTS::bestS, SEQALN_RESULTS::bestSi, SEQALN_RESULTS::bestSj, SEQALN_CONSTANTS::beta, SEQALN_CONSTANTS::btype, SEQALN_PVALUE::coeff, DISTANCE, SEQALN_RESULTS::F, FIT, SEQALN_PVALUE::gamma, gap(), GLOBAL, SEQALN_PVALUE::hist, SEQALN_PVALUE::lambda, SEQALN_SEQUENCE::len, SEQALN_RESULTS::linbits, LINEAR, LOCAL, SEQALN_RESULTS::maxentry, SEQALN_CONSTANTS::memuse, min, SEQALN_CONSTANTS::mtype, SEQALN_CONSTANTS::naligns, SEQALN_RESULTS::naligns, SEQALN_PVALUE::ndeclumps, SEQALN_CONSTANTS::ndeclumps, SEQALN_PVALUE::nhist, SEQALN_PVALUE::npvals, SEQALN_PVALUE::nsims, SEQALN_CONSTANTS::nsims, OVER, SEQALN_PVALUE::p, SEQALN_CONSTANTS::palpha, SEQALN_CONSTANTS::pbeta, PROFILE, SEQALN_CONSTANTS::ptype, SEQALN_PVALUE::pvalue, SEQALN_RESULTS::pvalue, PVALUE, SEQALN_SEQUENCE::resized, SEQALN_RESULTS::S, SELF, SEQALN_CONSTANTS::stats, SEQALN_IO::STDERR, SEQALN_CONSTANTS::stype, TANDEM, and topscore().

Referenced by dyaln::align(), main(), pvlocalS(), and pvsrlocalS().