Variables | |
| program options gene geneSymbolFile the input file is a tab delimited file containing the full text and the symbol Full_text_of_gene GeneSymbol hard to parse or typoerrors can be put into this table The program will output all geneSymbols into the same file | May |
| T P or D default is dna sets | inputFileType |
| T P or D default is dna sets for | chromosomes |
| T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser *gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence | keys |
| T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser *gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects | Currently |
| T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser *gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Genome Annotation files provides proteins in separate files so there is no need to output protein annotations use P to turn off p to turn | on |
| T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser *gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Genome Annotation files provides proteins in separate files so there is no need to output protein annotations use P to turn off p to turn default is on I have not used the controlled vacabulary to parse | qualifiers |
| T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser *gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Genome Annotation files provides proteins in separate files so there is no need to output protein annotations use P to turn off p to turn default is on I have not used the controlled vacabulary to parse right now GenBank used a double quote to delimit this In a few | cases |
T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser* gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Genome Annotation files provides proteins in separate files so there is no need to output protein annotations use P to turn off p to turn default is on I have not used the controlled vacabulary to parse right now GenBank used a double quote to delimit this In a few cases [static] |
| T P or D default is dna sets for chromosomes |
T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser* gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Currently [static] |
| T P or D default is dna sets inputFileType |
Initial value:
protein or dna ------------------------------------------------------------------------ fqtable not used inside fqtable.h no attempt should be made to guess the common name from SOURCE feature2.h and feature2.cpp replaced with feature.h and feature.cpp I have moved the strformat.h and .cpp into the libkemin.a file that is located in the proj/include directory linking is done through -L. strformat.h and strformat.cpp will be removed from this directory in the future Not dumping STS and Clone information for Genomic DNA
Referenced by main().
T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser* gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence keys [static] |
| program options gene geneSymbolFile the input file is a tab delimited file containing the full text and the symbol Full_text_of_gene GeneSymbol hard to parse or typoerrors can be put into this table The program will output all geneSymbols into the same file May |
T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser* gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Genome Annotation files provides proteins in separate files so there is no need to output protein annotations use P to turn off p to turn on [static] |
Referenced by Socket::create().
T P or D default is dna sets for this will create too many linkings and will degrate performance I will disable such information from parsed within the parser* gb2ace has replaced the g2a for genome parsing use the new model file from the genome most recent human database use pfeature h instead of feature h gb2ace static structure members remembers global environment for Subsequence so that no subsequence will use the same identifier Paper keys Paper with the same content will not make different objects Papers referenced by different sequences may be the same Organism only output their name No needs to create substantal information about the phylogeny It should be maintained in a separate database Controls whehter to output protein objects Genome Annotation files provides proteins in separate files so there is no need to output protein annotations use P to turn off p to turn default is on I have not used the controlled vacabulary to parse qualifiers [static] |
1.5.6