seqdiv.cpp File Reference

#include <iostream>
#include <fstream>
#include <cstring>
#include <string>
#include <sstream>
#include <vector>
#include <map>
#include "nameoutfile.h"
#include <iterator>
#include <cstdlib>

Functions
void	getInput (char inf[])
void	toLower (string &s)
map< string, vector< string > >	readConf (const char cnf[])
vector< string >	split (string str)
int	main (int argc, char *argv[])

---

Function Documentation

void getInput

(

char

inf[]

)

Separates GB sequence according to keywords in the lineage line following the ORGANISM record mainly for separating sau and amp divisions from the vrt division

Adding the ability to read from a config file example in seqdiv.conf in this source code directory

I will hardcode this into this source code, so that the caller don't have to call the config file

int main	(	int	argc,
		char *	argv[]
	)

References ifstream(), nameFile(), readConf(), and usage.

map< string, vector< string > > readConf

(

const char

cnf[]

)

References ifstream(), and split().

Referenced by main().

vector<string> split

(

string

str

)

helper function to split string into vector of words

void toLower

(

string &

s

)

Referenced by main().