sim4.cpp File Reference

#include "sim4.h"
#include <stdlib.h>
#include <iostream.h>
#include <ctype.h>
#include <string.h>

Functions
ostream &	operator<< (ostream &os, const exon &ex)
ostream &	operator<< (ostream &os, const edit_script_list &esl)
ostream &	operator<< (ostream &os, const sim4_stats &ss)
Variables
comparisonType	file_type

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Function Documentation

ostream& operator<<	(	ostream &	os,
		const sim4_stats &	ss
	)

References sim4_stats::fcoverage, sim4_stats::icoverage, sim4_stats::internal, sim4_stats::marginals, sim4_stats::mult, and sim4_stats::nmatches.

ostream& operator<<	(	ostream &	os,
		const edit_script_list &	esl
	)

References edit_script_list::next_script, and edit_script_list::offset1.

ostream& operator<<	(	ostream &	os,
		const exon &	ex
	)

References EST_GEN, file_type, exon::from1, exon::from2, exon::match, exon::next_exon, exon::ori, exon::to1, and exon::to2.

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Variable Documentation

comparisonType file_type

Referenced by dispatch_find_ends(), exon_cores(), main(), operator<<(), and print_exons().