splice.h File Reference

Go to the source code of this file.

Functions
splice_t *	new_splice (char, int, int, int, int, int, splice_t *)
void	splice (const char *in_seqx, int ls, int us, int le, int ue, const char *in_seqy, int ys, int ye, splice_t **g, splice_t **c, int ori)
Variables
signal_t	gt
signal_t	ct
signal_t	ag
signal_t	ac

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Function Documentation

splice_t* new_splice	(	char	,
		int	,
		int	,
		int	,
		int	,
		int	,
		splice_t *
	)

References ckalloc(), spliced::next, spliced::score, spliced::type, spliced::xe, spliced::xs, spliced::ye, and spliced::ys.

Referenced by splice(), and sync_slide_intron().

void splice	(	const char *	in_seqx,
		int	ls,
		int	us,
		int	le,
		int	ue,
		const char *	in_seqy,
		int	ys,
		int	ye,
		splice_t **	g,
		splice_t **	c,
		int	ori
	)

References ac, ag, BOTH, BWD, ckalloc(), ct, encoding, FWD, gt, new_splice(), splice_acceptor(), splice_acceptor_uni(), splice_donor(), and splice_donor_uni().

Referenced by slide_intron(), and sync_slide_intron().

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Variable Documentation

signal_t ac

Referenced by splice().

signal_t ag

Referenced by main(), splice(), and trainer::train().

signal_t ct

Referenced by splice(), and translate().

signal_t gt

Referenced by splice().