aln_output.h

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00001 #ifndef ALN_OUTPUT_H
00002 #define ALN_OUTPUT_H
00003 
00004 #include "seqaln.h"
00005 #include <stdio.h>
00006 
00007 void rpt_align(struct SEQALN_SEQUENCE *seq1,
00008                 struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring,
00009                 struct SEQALN_RESULTS *results, struct SEQALN_IO *io);
00010 
00011 void rpt_alignment(struct SEQALN_SEQUENCE *seq1,
00012                 struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring,
00013                 struct SEQALN_RESULTS *results, struct SEQALN_IO *io);
00014 
00015 void rpt_row(struct SEQALN_SEQUENCE  *seq1,
00016                 struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring,
00017                 struct SEQALN_RESULTS *results, struct SEQALN_IO *io, int i);
00018 
00019 void rpt_scores(struct SEQALN_SEQUENCE  *seq1,
00020                 struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring,
00021                 struct SEQALN_RESULTS   *results, struct SEQALN_IO *io);
00022 
00023 void rpt_scores(struct SEQALN_SEQUENCE  *seq1,
00024                 struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring,
00025                 struct SEQALN_RESULTS *results, struct SEQALN_IO *io);
00026 
00027 void print_trace(struct SEQALN_CONSTANTS *scoring,
00028                 struct SEQALN_RESULTS *results, struct SEQALN_IO *io);
00029 
00030 #endif