#include <stdio.h>Go to the source code of this file.
Classes | |
| struct | SEQALN_IO |
| struct | SEQALN_LSTRUCT |
| struct | SEQALN_SIJ |
| struct | SEQALN_SEQUENCE |
| struct | SEQALN_PROFILE |
| struct | SEQALN_CONSTANTS |
| struct | SEQALN_RESULTS |
| struct | SEQALN_PVALUE |
Defines | |
| #define | MAXLINE 512 |
| #define | MAXPATH 2000 |
| #define | MAXSEQNAME 1024 |
Typedefs | |
| typedef struct SEQALN_LSTRUCT | SEQALN_TRACE |
| typedef int | SEQALN_PROROW [26] |
Enumerations | |
| enum | SEQALN_FTYPE { SEQ, MAT, PRO, DIS, DB, PIPE, SOCKET, SEQ, MAT, PRO, DIS, DB, PIPE, SOCKET } |
| enum | SEQALN_DBTYPE { UNKNOWN, GENBANK, NEWAT, FASTA, PIR, SWISSPROT, UNKNOWN, GENBANK, NEWAT, FASTA, PIR, SWISSPROT } |
| enum | PTYPE { GLOBAL, FIT, OVER, LOCAL, GLOBAL, FIT, OVER, LOCAL } |
| enum | STYPE { MATRIX, NONMATRIX, PROFILE, MATRIX, NONMATRIX, PROFILE } |
| enum | MTYPE { DISTANCE, SIMILARITY, DISTANCE, SIMILARITY } |
| enum | BTYPE { FULL, SELF, TANDEM, BAND, FULL, SELF, TANDEM, BAND } |
| enum | MEMUSE { LINEAR, SQUARE, LINEAR, SQUARE } |
| enum | STATS { NONE, PVALUE, NONE, PVALUE } |
Variables | |
| static char * | SEQALN_VERSION = "1.20" |
| #define MAXLINE 512 |
| #define MAXPATH 2000 |
| #define MAXSEQNAME 1024 |
| typedef int SEQALN_PROROW[26] |
| typedef struct SEQALN_LSTRUCT SEQALN_TRACE |
| enum BTYPE |
| enum MEMUSE |
| enum MTYPE |
| enum PTYPE |
| enum SEQALN_DBTYPE |
| enum SEQALN_FTYPE |
| enum STATS |
| enum STYPE |
char* SEQALN_VERSION = "1.20" [static] |
1.5.6