BlastParameter Struct Reference

#include <kzblast.h>

List of all members.

Public Member Functions
	BlastParameter ()
Public Attributes
int	wordSize
float	neighborThreshold
float	neighborFraction
int	wordjoin
int	extDropoff
int	extCutoff
int	gapOpen
int	gapExtend
int	gapAlignDropOff

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Constructor & Destructor Documentation

BlastParameter::BlastParameter

(

)

[inline]

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Member Data Documentation

int BlastParameter::wordSize

Referenced by Lale::findMatch(), and main().

float BlastParameter::neighborThreshold

Referenced by Lale::buildfsa(), and main().

float BlastParameter::neighborFraction

Referenced by Lale::buildfsa(), and main().

int BlastParameter::wordjoin

Referenced by Lale::findMatch().

int BlastParameter::extDropoff

Referenced by Lale::extendhit().

int BlastParameter::extCutoff

Referenced by Lale::extendhit(), and Lale::findMatch().

int BlastParameter::gapOpen

Referenced by Linkbox::connect(), and main().

int BlastParameter::gapExtend

Referenced by Linkbox::connect(), and main().

int BlastParameter::gapAlignDropOff

Referenced by Linkbox::connect(), and main().

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The documentation for this struct was generated from the following file:

• seqaln/src/blast/kzblast.h