PfogParameters Struct Reference

List of all members.

Public Member Functions
	PfogParameters ()
string	getOutputTable () const
Public Attributes
float	qcovcut
int	qcovlencut
float	identitycut
int	showevery
int	chunk_size
string	input_table
string	output_table
string	nr
string	prtinfile

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Constructor & Destructor Documentation

PfogParameters::PfogParameters

(

)

[inline]

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Member Function Documentation

string PfogParameters::getOutputTable

(

)

const [inline]

References output_table.

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Member Data Documentation

float PfogParameters::qcovcut

Referenced by main(), and storeBestModels().

int PfogParameters::qcovlencut

Referenced by storeBestModels().

float PfogParameters::identitycut

Referenced by bufferProteins(), main(), and processOneBatch().

int PfogParameters::showevery

Referenced by processOneBatch().

int PfogParameters::chunk_size

Referenced by bufferProteins(), main(), and processOneBatch().

string PfogParameters::input_table

Referenced by bufferProteins(), main(), and processOneBatch().

string PfogParameters::output_table

Referenced by getOutputTable().

string PfogParameters::nr

Referenced by bufferProteins().

string PfogParameters::prtinfile

Referenced by main().

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The documentation for this struct was generated from the following file:

• seqaln/Utility/pfog.cpp