ProgParameters Struct Reference

List of all members.

Public Member Functions
	ProgParameters ()
bool	enough ()
	ProgParameters ()
string	getOutputTable () const
Public Attributes
float	qcovcut
int	qcovlencut
float	identitycut
float	scorecut
int	showevery
string	prtinfile
string	genomicfile
string	tbnfile
string	summaryfile
string	detailfile
int	chunk_size
string	input_table
string	output_table
string	tbndb
string	tbntab

---

Constructor & Destructor Documentation

ProgParameters::ProgParameters

(

)

[inline]

ProgParameters::ProgParameters

(

)

[inline]

---

Member Function Documentation

bool ProgParameters::enough

(

)

[inline]

References genomicfile, prtinfile, and tbnfile.

Referenced by main().

string ProgParameters::getOutputTable

(

)

const [inline]

References output_table.

---

Member Data Documentation

float ProgParameters::qcovcut

Referenced by main(), and storeBestModels().

int ProgParameters::qcovlencut

Referenced by storeBestModels().

float ProgParameters::identitycut

Referenced by bufferProteins(), main(), processAll(), and storeBestModels().

float ProgParameters::scorecut

Referenced by main(), and storeBestModels().

int ProgParameters::showevery

Referenced by processAll().

string ProgParameters::prtinfile

Referenced by enough(), and main().

string ProgParameters::genomicfile

Referenced by enough(), and main().

string ProgParameters::tbnfile

Referenced by enough(), main(), and processAll().

string ProgParameters::summaryfile

for output

Referenced by main(), and processAll().

string ProgParameters::detailfile

Referenced by main(), and processAll().

int ProgParameters::chunk_size

Referenced by bufferProteins().

string ProgParameters::input_table

Referenced by bufferProteins(), and main().

string ProgParameters::output_table

Referenced by getOutputTable().

string ProgParameters::tbndb

Referenced by processAll().

string ProgParameters::tbntab

Referenced by processAll().

---

The documentation for this struct was generated from the following files:

• seqaln/Utility/pfogfile.cpp
• seqaln/Utility/pfogmultipledb.cpp