seqinfo Struct Reference

#include <seqinfo.h>

List of all members.

Public Member Functions
const char *	name () const
	seqinfo ()
bool	isseg () const
void	nameseg (char sgn[]) const
void	getcntstr (char cntstr[])
string	getcntstr ()
Public Attributes
char	type [20]
bool	linear
char	acc [20]
char	org [60]
char	locus [17]
char	seg [12]
char	div [4]
int	len
int	cdsCount
int	sourCount
int	mrnaCount
int	rnaCount
int	rptCount
int	tokCount
int	subcnt
set< string >	sk

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Constructor & Destructor Documentation

seqinfo::seqinfo

(

)

References acc, div, locus, org, seg, and type.

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Member Function Documentation

const char* seqinfo::name

(

)

const [inline]

References acc.

Referenced by head::dump(), main(), feature::wjoinseg(), feature::writeAllele(), feature::writeCDS(), feature::writeGene(), feature::writemRNA(), feature::writeRNA(), feature::writerpt(), feature::writeSource(), and feature::writeToken().

bool seqinfo::isseg

(

)

const [inline]

References seg.

Referenced by feature::wjoinseg().

void seqinfo::nameseg

(

char

sgn[]

)

const

References locus, and seg.

Referenced by head::dump(), and feature::wjoinseg().

void seqinfo::getcntstr

(

char

cntstr[]

)

[inline]

References itoa(), and subcnt.

Referenced by feature::writeCDS(), feature::writemRNA(), and feature::writerpt().

string seqinfo::getcntstr

(

)

References itoa(), string(), and subcnt.

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Member Data Documentation

char seqinfo::type[20]

Referenced by head::dump(), head::loadSeqInfo(), seqinfo(), feature::writeCDS(), feature::writeGene(), and feature::writemRNA().

bool seqinfo::linear

Referenced by head::loadSeqInfo().

char seqinfo::acc[20]

Referenced by head::loadSeqInfo(), main(), name(), rwComment(), and seqinfo().

char seqinfo::org[60]

Referenced by head::dump(), head::loadSeqInfo(), main(), orgtag(), seqinfo(), and feature::writeCDS().

char seqinfo::locus[17]

Referenced by head::dump(), head::loadSeqInfo(), nameseg(), head::segmentOut(), and seqinfo().

char seqinfo::seg[12]

Referenced by isseg(), head::loadSeqInfo(), nameseg(), and seqinfo().

char seqinfo::div[4]

Referenced by head::loadSeqInfo(), and seqinfo().

int seqinfo::len

Referenced by head::dump(), head::loadSeqInfo(), feature::rptdump(), feature::wFeature(), feature::writeRNA(), and feature::writeSource().

int seqinfo::cdsCount

Referenced by feature::wjoinseg().

int seqinfo::sourCount

Referenced by feature::writeSource().

int seqinfo::mrnaCount

Referenced by feature::wjoinseg().

int seqinfo::rnaCount

Referenced by feature::writeRNA().

int seqinfo::rptCount

int seqinfo::tokCount

Referenced by feature::writeAllele(), and feature::writeToken().

int seqinfo::subcnt

Referenced by getcntstr().

set<string> seqinfo::sk

Referenced by feature::writeCDS(), feature::writemRNA(), feature::writeRNA(), and feature::writerpt().

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The documentation for this struct was generated from the following files:

• seqconv/gbtoace/seqinfo.h
• seqconv/gbtoace/seqinfo.cpp