testblast.cpp File Reference

#include <fstream>
#include "kzblast.h"
#include "boxchain.h"

Functions
int	main (int argc, char *argv[])

---

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References Lale::buildfsa(), Lale::findMatch(), BlastParameter::gapAlignDropOff, BlastParameter::gapExtend, BlastParameter::gapOpen, Lale::getMatrix(), Lale::getQuery(), ifstream(), BlastParameter::neighborFraction, BlastParameter::neighborThreshold, bioseq::read(), Lale::readQuery(), Dynaln::setAllParameter(), Linkbox::setBlastParameter(), Linkbox::setMatrix(), Alignsegex::setParameters(), and BlastParameter::wordSize.