Softwares from Orpara

o+Class List

|o*_MSP

|o*accession

|o*aceconnections

|o*acedbinfo

|o*AceException

|o*Acenode

|o*acedb::Aceobj

|o*Aceobj

|o*acedb::Aceobj::AceobjNode

|o*acedb::Aceobj::DumpStore

|o*aceparam

|o*afterMatchQuery

|o*alignment

|o*alignmentRunner

|o*alignpos

|o*Alignseg

|o*Alignsegex

|o*aln

|o*Alnparam

|o*Alnrange

|o*alnrange

|o*alnsummary

|o*Alnview

|o*Altranscript

|o*AQLException

|o*argv_scores

|o*avgrange

|o*Badinput

|o*beforeMatchQuery

|o*bioseq

|o*bioseqexception

|o*BlastParameter

|o*Blmodel

|o*Book

|o*book

|o*Boxchain

|o*cadbc

|o*CDSExon

|o*CDSload

|o*ChainAvgrange

|o*ClientSocket

|o*clusmethod

|o*cluster

|o*Clusterdump

|o*cmpMatchTbeginInt

|o*cmpMatchTbeginIntPtr

|o*cmpMatchTendInt

|o*cmpMatchTendIntPtr

|o*cmpQueryPtr

|o*cmpTargetDirectionalPtr

|o*cmpTargetPtr

|o*codon

|o*coordinates

|o*Cutoff

|o*Date

|o*DateException

|o*dbinfo

|o*DBInfo

|o*Dbstat

|o*dbtime

|o*divstat

|o*DNA

|o*DNANotFound

|o*DRgreater

|o*dseq

|o*DumpCDSLoadFile

|o*dumpClusterPrt

|o*dumpClusterTitle

|o*dyaln

|o*Dynaln

|o*edit

|o*edit_script

|o*edit_script_list

|o*ESTAssembly

|o*ESTCombined

|o*ESTModel

|o*exon

|o*ExondirectionError

|o*ExtractEnd

|o*featerr

|o*featErr

|o*featLocErr

|o*feature

|o*Fetchaceprt

|o*FitNgidentity

|o*FPGModel

|o*fpkey

|o*func

|o*gbdate

|o*gbdnaseq

|o*gberr

|o*gbprt

|o*gbprtseq

|o*gbreferr

|o*gbseq

|o*gconst

|o*gdiagnosis

|o*GeneModel

|o*genetics

|o*GenModel

|o*gentree

|o*Gmapalnseg

|o*Gmapath

|o*Gmapres

|o*GModel< T >

|o*Graph

|o*GraphNode

|o*group

|o*gstat

|o*HalfAlignInterval

|o*HalfAlignPile

|o*hash_node

|o*hatrees< T >

|o*head

|o*HeadNode

|o*hit

|o*hit::end

|o*Inpress

|o*InputColumn

|o*inputend

|o*inputException

|o*Intabcol

|o*Interval

|o*IntervalChain

|o*IntervalPile

|o*intnode

|o*intron

|o*InvalidJGIModel

|o*InvalidModel

|o*JGIModel

|o*jinfo

|o*journal

|o*Journal

|o*kzseq

|o*Lale

|o*lessGraphNodePtr

|o*lgraph

|o*Linkbox

|o*Linkmatch

|o*lnode

|o*LoadCDSFromOneDB

|o*loadpair

|o*loadprt

|o*locseg

|o*LSDynaln

|o*ltAlignsegexBeginYPtr

|o*ltAlignsegexEndYPtr

|o*ltAlignsegYXlen

|o*ltMatchQueryBeginPtr

|o*ltrie

|o*M8Match

|o*M8MatchChain

|o*M8MatchEX

|o*Match

|o*match

|o*MatchQueryLessThan

|o*Matrix

|o*MD5

|o*mgsaln

|o*Model

|o*ModelFactory

|o*ModmRNAvalidate

|o*mRNA

|o*mRNAModel

|o*msp

|o*Mydatabase

|o*MysqlDBInfo

|o*namedlocseg

|o*njtree

|o*node< T >

|o*Noschain

|o*notlessMatchQueryBegin

|o*Online

|o*Orgload

|o*OutsideGenomicSequence

|o*parerr

|o*parsererror

|o*Patent

|o*pepNotFound

|o*PfogParameters

|o*pgdbinfo

|o*pointers

|o*PointOutChain

|o*pregcut

|o*ProgParam

|o*Progparam

|o*ProgParameters

|o*Protein

|o*protein

|o*ProteinTable

|o*prt

|o*qualif

|o*Range

|o*RangeChain

|o*rangePair

|o*Rangewid

|o*ref

|o*Ref

|o*reference

|o*Reference

|o*refloc

|o*Refreader

|o*Refwithty

|o*region

|o*Region

|o*RegionInt

|o*RegionStr

|o*Relmin

|o*Relrow

|o*Relrow_eq1

|o*Relrow_eq1Lgcov

|o*Relrow_eq1Matchlen

|o*Relrow_eq1Score

|o*Relrow_eq1Smcov

|o*Relrow_eq2

|o*Relrow_less

|o*Relrow_lessLgcov

|o*Relrow_lessMatchlen

|o*Relrow_lessScore

|o*Relrow_lessSmcov

|o*Resrow

|o*Result

|o*RNAModel

|o*scorepair

|o*SEQALN_CONSTANTS

|o*SEQALN_IO

|o*SEQALN_LSTRUCT

|o*SEQALN_PROFILE

|o*SEQALN_PVALUE

|o*SEQALN_RESULTS

|o*SEQALN_SEQUENCE

|o*SEQALN_SIJ

|o*seqelem

|o*seqinfo

|o*Seqrange

|o*seqrslt

|o*ServerSocket

|o*sim4_stats

|o*sim4Args

|o*SimpleSelect

|o*SNavgstd

|o*Socket

|o*SocketException

|o*spliced

|o*SplitResult

|o*stddev

|o*Subclparam

|o*Submission

|o*suml

|o*Tblastn

|o*Tblastnmy

|o*Thesis

|o*time

|o*trainer

|o*TranscriptExon

|o*Unpublished

|o*Valence

|o*ValNode

|o*version

|o*vertexinfo

|o*WeatherPainter

|o*WeatherWizard

|o*word

|\*wordList

o+Class Hierarchy

|o*_MSP

|o*accession

|o*aceconnections

|o+AceException

|o*Acenode

|o*acedb::Aceobj

|o*Aceobj

|o*acedb::Aceobj::AceobjNode

|o*acedb::Aceobj::DumpStore

|o*aceparam

|o*afterMatchQuery

|o*alignment

|o*alignmentRunner

|o*alignpos

|o+Alignseg

|o*aln

|o*Alnparam

|o*Alnrange

|o+alnrange

|o*alnsummary

|o*Alnview

|o*Altranscript

|o*argv_scores

|o*avgrange

|o*Badinput

|o*beforeMatchQuery

|o+bioseq

|o*bioseqexception

|o*BlastParameter

|o*book

|o*Boxchain

|o*cadbc

|o*CDSload

|o*ChainAvgrange

|o*clusmethod

|o*cluster

|o*Clusterdump

|o*cmpMatchTbeginInt

|o*cmpMatchTbeginIntPtr

|o*cmpMatchTendInt

|o*cmpMatchTendIntPtr

|o*cmpQueryPtr

|o*cmpTargetDirectionalPtr

|o*cmpTargetPtr

|o*codon

|o*coordinates

|o*Cutoff

|o*Date

|o*DateException

|o+dbinfo

|o*DBInfo

|o*Dbstat

|o*dbtime

|o*divstat

|o*DRgreater

|o*dseq

|o*DumpCDSLoadFile

|o*dumpClusterPrt

|o*dumpClusterTitle

|o*dyaln

|o+Dynaln

|o*edit

|o*edit_script

|o*edit_script_list

|o*ESTCombined

|o*exon

|o*ExondirectionError

|o*ExtractEnd

|o*featerr

|o+featErr

|o*feature

|o*Fetchaceprt

|o*FitNgidentity

|o*fpkey

|o*func

|o*gbdate

|o+gberr

|o*gbprt

|o+gbseq

|o+gconst

|o*GeneModel

|o*genetics

|o*gentree

|o*Gmapalnseg

|o*Gmapath

|o*Gmapres

|o*GModel< T >

|o+GModel< fpkey >

|o*Graph

|o*GraphNode

|o*hash_node

|o*hatrees< T >

|o*head

|o*hit

|o*hit::end

|o*InputColumn

|o*inputend

|o*inputException

|o*Intabcol

|o+Interval

|o*intnode

|o*intron

|o*InvalidJGIModel

|o*InvalidModel

|o*jinfo

|o*journal

|o*kzseq

|o*Lale

|o*lessGraphNodePtr

|o*lgraph

|o*Linkbox

|o*Linkmatch

|o*lnode

|o*LoadCDSFromOneDB

|o*loadpair

|o*loadprt

|o+locseg

|o*ltAlignsegexBeginYPtr

|o*ltAlignsegexEndYPtr

|o*ltAlignsegYXlen

|o*ltMatchQueryBeginPtr

|o*ltrie

|o*M8MatchChain

|o+Match

|o*match

|o*MatchQueryLessThan

|o*Matrix

|o*MD5

|o*mgsaln

|o*Model

|o*ModelFactory

|o*ModmRNAvalidate

|o*msp

|o*Mydatabase

|o*MysqlDBInfo

|o*njtree

|o*node< T >

|o*notlessMatchQueryBegin

|o*Orgload

|o*OutsideGenomicSequence

|o*parerr

|o*parsererror

|o*PfogParameters

|o*pointers

|o*PointOutChain

|o*pregcut

|o*ProgParam

|o*Progparam

|o*ProgParameters

|o*protein

|o*ProteinTable

|o*prt

|o*qualif

|o+Range

|o*ref

|o+Ref

|o*reference

|o*Reference

|o*refloc

|o*Refreader

|o*region

|o+Region

|o*Relmin

|o*Relrow

|o*Relrow_eq1

|o*Relrow_eq1Lgcov

|o*Relrow_eq1Matchlen

|o*Relrow_eq1Score

|o*Relrow_eq1Smcov

|o*Relrow_eq2

|o*Relrow_less

|o*Relrow_lessLgcov

|o*Relrow_lessMatchlen

|o*Relrow_lessScore

|o*Relrow_lessSmcov

|o*Resrow

|o*Result

|o*scorepair

|o*SEQALN_CONSTANTS

|o*SEQALN_IO

|o*SEQALN_LSTRUCT

|o*SEQALN_PROFILE

|o*SEQALN_PVALUE

|o*SEQALN_RESULTS

|o*SEQALN_SEQUENCE

|o*SEQALN_SIJ

|o*seqelem

|o*seqinfo

|o*Seqrange

|o*seqrslt

|o*sim4_stats

|o*sim4Args

|o*SimpleSelect

|o*SNavgstd

|o+Socket

|o*SocketException

|o*spliced

|o*SplitResult

|o*stddev

|o*Subclparam

|o*suml

|o+Tblastn

|o*time

|o*trainer

|o+TranscriptExon

|o+Valence

|o*ValNode

|o*version

|o*vertexinfo

|o*WeatherPainter

|o*WeatherWizard

|o*word

|\*wordList

o*Class Members

o+Namespace List

o+File List

|o*README

|o*alnmodel/alignment.cc

|o*alnmodel/alignment.h

|o*alnmodel/alnmodel.cc

|o*alnmodel/qcaln.cc

|o*alnmodel/qcmultialn.cc

|o*alnmodel/README

|o*alnmodel/seqaln2gapos.cpp

|o*alnmodel/variation.cpp

|o*alnview/Alnview.java

|o*alnview/README

|o*automation/loadsatacruz/README

|o*automation/loadtaxonomy/README

|o*automation/loadtaxonomy/SimpleSelect.java

|o*bionj/bionj.cpp

|o*bionj/initialize.cpp

|o*bionj/initialize.h

|o*bionj/ngiden2distance.cpp

|o*bionj/njtree.cpp

|o*bionj/njtree.h

|o*bionj/oldbionj.c

|o*bionj/README

|o*bionj/testbionj.cpp

|o*bioseq/bioseq.cpp

|o*bioseq/bioseq.h

|o*bioseq/codon.cpp

|o*bioseq/codon.h

|o*bioseq/Evolution.h

|o*bioseq/FPGModel.cpp

|o*bioseq/FPGModel.h

|o*bioseq/GModel.h

|o*bioseq/Model.cpp

|o*bioseq/Model.h

|o*bioseq/README

|o*bioseq/testseq.cpp

|o*cadbc/Aceobj.cpp

|o*cadbc/Aceobj.h

|o*cadbc/cadbc.cpp

|o*cadbc/cadbc.h

|o*cadbc/getsubseq.cpp

|o*cadbc/intergenic.cpp

|o*cadbc/Result.cpp

|o*cadbc/Result.h

|o*cadbc/Seqrange.cpp

|o*cadbc/Seqrange.h

|o*cadbc/seqrslt.h

|o*cadbc/testaql.cpp

|o*cadbc/testclt.cpp

|o*cadbc/testobj.cpp

|o*cluster/alnrange.cpp

|o*cluster/alnrange.h

|o*cluster/breakcl.cpp

|o*cluster/ChainAvgrange.cpp

|o*cluster/ChainAvgrange.h

|o*cluster/chimeradetect.cpp

|o*cluster/chimeradetect_mysql.cpp

|o*cluster/clusmethod.cc

|o*cluster/clusmethod.h

|o*cluster/cluster.cc

|o*cluster/cluster.h

|o*cluster/Clusterdump.java

|o*cluster/DBStat.cpp

|o*cluster/DBStat.h

|o*cluster/dumpClusterPrt.java

|o*cluster/dumpClusterTitle.java

|o*cluster/gconst.cpp

|o*cluster/gconst.h

|o*cluster/gecods.cpp

|o*cluster/gecods_mysql.cpp

|o*cluster/group.cpp

|o*cluster/group.h

|o*cluster/hatrees.h

|o*cluster/loadpgdb.cpp

|o*cluster/loadpgdb.h

|o*cluster/orthopara.cc

|o*cluster/picklongrep.cpp

|o*cluster/pickmember.cpp

|o*cluster/pickorthodiv.cpp

|o*cluster/README

|o*cluster/README_group

|o*cluster/rmfalselink.cpp

|o*cluster/scorepair.cpp

|o*cluster/scorepair.h

|o*cluster/subcluster.cpp

|o*cluster/testgsl.cpp

|o*cluster/testread.cpp

|o*cppsocket/ClientSocket.cpp

|o*cppsocket/ClientSocket.h

|o*cppsocket/ServerSocket.cpp

|o*cppsocket/ServerSocket.h

|o*cppsocket/simple_client_main.cpp

|o*cppsocket/simple_server_main.cpp

|o*cppsocket/Socket.cpp

|o*cppsocket/Socket.h

|o*cppsocket/SocketException.h

|o*dbutil/dbinfo.cpp

|o*dbutil/dbinfo.h

|o*dbutil/testdbinfo.cpp

|o*gbprt2ace/gbprt2ace.cpp

|o*genanno/ec/README

|o*genericTree/Aceobj.cpp

|o*genericTree/Aceobj.h

|o*genericTree/Aceobj.java

|o*genericTree/gentree.h

|o*genericTree/README

|o*genericTree/testobj.cpp

|o*genewise/kzgenewise.cpp

|o*graph/fap.cpp

|o*graph/lgraph.cpp

|o*graph/lgraph.h

|o*manageAce/README

|o*md5cpp/driver.cc

|o*md5cpp/md5.cc

|o*md5cpp/md5.h

|o*md5cpp/README

|o*md5cpp/testmd5.cpp

|o*ortho/CDSload.java

|o*ortho/DumpCDSLoadFile.java

|o*ortho/LoadCDSFromAce.java

|o*ortho/LoadCDSFromOneDB.java

|o*ortho/Orgload.java

|o*ortho/README

|o*ortho/TestAcedb.java

|o*parsetree/gentree.cpp

|o*parsetree/gentree.h

|o*parsetree/gpcrtree.cpp

|o*pirtoace/check.cpp

|o*pirtoace/date.cpp

|o*pirtoace/date.h

|o*pirtoace/head.cpp

|o*pirtoace/head.h

|o*pirtoace/parerr.cpp

|o*pirtoace/parerr.h

|o*pirtoace/pir2ace.cpp

|o*pirtoace/strformat.cpp

|o*pirtoace/strformat.h

|o*range/checkchimera.cpp

|o*range/combest.cpp

|o*range/Esambl.cpp

|o*range/Esambl.h

|o*range/ESTCombined.cpp

|o*range/ESTCombined.h

|o*range/GenModel.cpp

|o*range/GenModel.h

|o*range/Gmapres.cpp

|o*range/Gmapres.h

|o*range/Interval.cpp

|o*range/Interval.h

|o*range/nrep.cpp

|o*range/Range.cpp

|o*range/Range.h

|o*range/README

|o*range/README.nrep

|o*range/RNAModel.cpp

|o*range/RNAModel.h

|o*range/testEsambl.cpp

|o*range/testExon.cpp

|o*range/testGModel.cpp

|o*range/testinterval.cpp

|o*range/TranscriptExon.cpp

|o*range/TranscriptExon.h

|o*seqaln/randist/expdist.c

|o*seqaln/randist/genigfsr.c

|o*seqaln/randist/GFSR.c

|o*seqaln/randist/GFSR.h

|o*seqaln/randist/normdist.c

|o*seqaln/randist/unidist.c

|o*seqaln/seqaln/demo/i_fitD.c

|o*seqaln/seqaln/demo/i_fitS.c

|o*seqaln/seqaln/demo/i_globalD.c

|o*seqaln/seqaln/demo/i_globalS.c

|o*seqaln/seqaln/demo/i_localS.c

|o*seqaln/seqaln/demo/i_mfitD.c

|o*seqaln/seqaln/demo/i_mfitS.c

|o*seqaln/seqaln/demo/i_mglobalD.c

|o*seqaln/seqaln/demo/i_mglobalS.c

|o*seqaln/seqaln/demo/i_mlocalS.c

|o*seqaln/seqaln/demo/i_moverS.c

|o*seqaln/seqaln/demo/i_mpvlocalS.c

|o*seqaln/seqaln/demo/i_mpvsrlocalS.c

|o*seqaln/seqaln/demo/i_msrlocalS.c

|o*seqaln/seqaln/demo/i_mtrlocalS.c

|o*seqaln/seqaln/demo/i_overS.c

|o*seqaln/seqaln/demo/i_pfitS.c

|o*seqaln/seqaln/demo/i_pvlocalS.c

|o*seqaln/seqaln/demo/i_pvsrlocalS.c

|o*seqaln/seqaln/demo/i_srlocalS.c

|o*seqaln/seqaln/demo/i_trlocalS.c

|o*seqaln/seqaln/demo/mlocalSDB.c

|o*seqaln/seqaln/doc/man/icat.c

|o*seqaln/seqaln/doc/man/README

|o*seqaln/seqaln/kzaln/aln.cpp

|o*seqaln/seqaln/kzaln/aln.h

|o*seqaln/seqaln/kzaln/aln_input.h

|o*seqaln/seqaln/kzaln/aln_output.h

|o*seqaln/seqaln/kzaln/alnfn.h

|o*seqaln/seqaln/kzaln/dynamicaln.h

|o*seqaln/seqaln/kzaln/helper.h

|o*seqaln/seqaln/kzaln/i_globalS.c

|o*seqaln/seqaln/kzaln/mgaln.h

|o*seqaln/seqaln/kzaln/mgsaln.cpp

|o*seqaln/seqaln/kzaln/mlocalS_str.cpp

|o*seqaln/seqaln/kzaln/mlocalS_str.h

|o*seqaln/seqaln/kzaln/mlocalSDB.cpp

|o*seqaln/seqaln/kzaln/README

|o*seqaln/seqaln/kzaln/seqaln.h

|o*seqaln/seqaln/kzaln/tabaln.cpp

|o*seqaln/seqaln/kzaln/tabaln_same.cpp

|o*seqaln/seqaln/kzaln/testaln.cpp

|o*seqaln/seqaln/kzaln/util.h

|o*seqaln/seqaln/src/a.h

|o*seqaln/seqaln/src/aln_input.c

|o*seqaln/seqaln/src/aln_input.h

|o*seqaln/seqaln/src/aln_output.c

|o*seqaln/seqaln/src/aln_output.h

|o*seqaln/seqaln/src/alnfn.h

|o*seqaln/seqaln/src/bestincol.c

|o*seqaln/seqaln/src/bestinrow.c

|o*seqaln/seqaln/src/dynamicaln.h

|o*seqaln/seqaln/src/fddeclump.c

|o*seqaln/seqaln/src/fitD.c

|o*seqaln/seqaln/src/fitS.c

|o*seqaln/seqaln/src/fsdeclump.c

|o*seqaln/seqaln/src/gen_align.c

|o*seqaln/seqaln/src/getbest.c

|o*seqaln/seqaln/src/getpvalue.c

|o*seqaln/seqaln/src/globalD.c

|o*seqaln/seqaln/src/globalS.c

|o*seqaln/seqaln/src/helper.c

|o*seqaln/seqaln/src/helper.h

|o*seqaln/seqaln/src/linreg.c

|o*seqaln/seqaln/src/localS.c

|o*seqaln/seqaln/src/ls20.c

|o*seqaln/seqaln/src/lsdeclump.c

|o*seqaln/seqaln/src/make_seq.c

|o*seqaln/seqaln/src/markdiag.c

|o*seqaln/seqaln/src/markseq.c

|o*seqaln/seqaln/src/mccaldon.h

|o*seqaln/seqaln/src/nextpval.c

|o*seqaln/seqaln/src/overS.c

|o*seqaln/seqaln/src/pfitS.c

|o*seqaln/seqaln/src/pfsdeclump.c

|o*seqaln/seqaln/src/prpt_row.c

|o*seqaln/seqaln/src/ptrace.c

|o*seqaln/seqaln/src/pvlocalS.c

|o*seqaln/seqaln/src/pvsrlocalS.c

|o*seqaln/seqaln/src/results_init.c

|o*seqaln/seqaln/src/seqaln.h

|o*seqaln/seqaln/src/srlocalS.c

|o*seqaln/seqaln/src/srlsdeclump.c

|o*seqaln/seqaln/src/topscore.c

|o*seqaln/seqaln/src/trace.c

|o*seqaln/seqaln/src/trlocalS.c

|o*seqaln/seqaln/src/trlsdeclump.c

|o*seqaln/seqaln/src/trrpt_alignment.c

|o*seqaln/seqaln/src/trrpt_scores.c

|o*seqaln/seqaln/src/trtrace.c

|o*seqaln/seqaln/src/util.c

|o*seqaln/seqaln/src/util.h

|o*seqaln/seqaln/util/pir_to_fasta.c

|o*seqaln/src/alnparam.h

|o*seqaln/src/chaining.cpp

|o*seqaln/src/dbaln.cpp

|o*seqaln/src/dbaln_cds.cpp

|o*seqaln/src/dbaln_chimera.cpp

|o*seqaln/src/dbaln_chimerarmsimp.cpp

|o*seqaln/src/dbaln_chimerathread.cpp

|o*seqaln/src/dbaln_fungal.cpp

|o*seqaln/src/dbaln_fungalbt.cpp

|o*seqaln/src/dbaln_fungalrmsimp.cpp

|o*seqaln/src/dbaln_nr.cpp

|o*seqaln/src/dbalnhelper.cpp

|o*seqaln/src/dbalnhelper.h

|o*seqaln/src/DBInfo.cpp

|o*seqaln/src/DBInfo.h

|o*seqaln/src/dynaln.cpp

|o*seqaln/src/dynaln.h

|o*seqaln/src/gwseedaln.cpp

|o*seqaln/src/helper.h

|o*seqaln/src/matrix.cpp

|o*seqaln/src/matrix.h

|o*seqaln/src/README

|o*seqaln/src/testaln.cpp

|o*seqaln/src/testDBInfo.cpp

|o*seqaln/src/testmatrix.cpp

|o*seqaln/src/testmysql.cpp

|o*seqaln/src/blast/alignseg.cpp

|o*seqaln/src/blast/alignseg.h

|o*seqaln/src/blast/boxchain.cpp

|o*seqaln/src/blast/boxchain.h

|o*seqaln/src/blast/kzblast.cpp

|o*seqaln/src/blast/kzblast.h

|o*seqaln/src/blast/linktrie.cpp

|o*seqaln/src/blast/linktrie.h

|o*seqaln/src/blast/README

|o*seqaln/src/blast/testblast.cpp

|o*seqaln/Utility/addentropy.cpp

|o*seqaln/Utility/Blmodel.cpp

|o*seqaln/Utility/Blmodel.h

|o*seqaln/Utility/buildjgitranscript.cpp

|o*seqaln/Utility/buildlocusinfo.cpp

|o*seqaln/Utility/compnr2gentropy.cpp

|o*seqaln/Utility/computenrEntropy.cpp

|o*seqaln/Utility/dumpcds.cpp

|o*seqaln/Utility/footprintHelper.cpp

|o*seqaln/Utility/footprintHelper.h

|o*seqaln/Utility/GeneModel.h

|o*seqaln/Utility/Match.cpp

|o*seqaln/Utility/Match.h

|o*seqaln/Utility/mergefootprint.cpp

|o*seqaln/Utility/Mysqlhelper.h

|o*seqaln/Utility/pfog.cpp

|o*seqaln/Utility/pfogfile.cpp

|o*seqaln/Utility/pfogmultipledb.cpp

|o*seqaln/Utility/pickrepmodel.cpp

|o*seqaln/Utility/picktopcds.cpp

|o*seqaln/Utility/picktopfootprint.cpp

|o*seqaln/Utility/picktopmodel.cpp

|o*seqaln/Utility/preparegw.cpp

|o*seqaln/Utility/README

|o*seqaln/Utility/rmsimpmatch.cpp

|o*seqaln/Utility/seqhelper.cpp

|o*seqaln/Utility/seqhelper.h

|o*seqaln/Utility/simple.cpp

|o*seqaln/Utility/Tblastnmy.h

|o*seqaln/Utility/testrange.cpp

|o*seqaln/Utility/testsimple.cpp

|o*seqaln/Utility/testsys.cpp

|o*seqaln/Utility/wolm.cpp

|o*seqana/Altranscript.java

|o*seqana/blast.cpp

|o*seqana/blast.h

|o*seqana/blpur.cpp

|o*seqana/blpurify.cpp

|o*seqana/ExtractEnd.java

|o*seqana/match.cpp

|o*seqana/match.h

|o*seqana/matrix.h

|o*seqana/ModmRNAvalidate.java

|o*seqana/MSPcrunch.h

|o*seqana/prtMatrix.h

|o*seqana/README

|o*seqana/Region.java

|o*seqana/RegionInt.java

|o*seqana/RegionStr.java

|o*seqana/selortho.cpp

|o*seqana/blastio/blast.cpp

|o*seqana/blastio/blast.h

|o*seqana/blastio/blpur.cpp

|o*seqana/blastio/blpurify.cpp

|o*seqana/blastio/filterblast.cpp

|o*seqana/blastio/match.cpp

|o*seqana/blastio/match.h

|o*seqana/blastio/matrix.h

|o*seqana/blastio/MSPcrunch.h

|o*seqana/blastio/prtMatrix.h

|o*seqana/blastio/README

|o*seqana/blastio/selortho.cpp

|o*seqana/filternr/README

|o*seqana/filternr/WeatherWizard.java

|o*seqana/runsgeblast/README

|o*seqana/seqsep/estsep.cpp

|o*seqana/seqsep/nameoutfile.cpp

|o*seqana/seqsep/nameoutfile.h

|o*seqana/seqsep/picknewseq.cpp

|o*seqana/seqsep/README

|o*seqana/seqsep/rmfrgss.cpp

|o*seqana/seqsep/seqdiv.cpp

|o*seqana/seqsep/seqsep.cpp

|o*seqana/seqsep/version.cpp

|o*seqana/seqsep/version.h

|o*seqconv/README

|o*seqconv/gbtoace/check.cpp

|o*seqconv/gbtoace/date.cpp

|o*seqconv/gbtoace/date.h

|o*seqconv/gbtoace/dseq.cpp

|o*seqconv/gbtoace/dseq.h

|o*seqconv/gbtoace/feature.cpp

|o*seqconv/gbtoace/feature.h

|o*seqconv/gbtoace/featureError.cpp

|o*seqconv/gbtoace/featureError.h

|o*seqconv/gbtoace/fqtable.h

|o*seqconv/gbtoace/g2a.cpp

|o*seqconv/gbtoace/gb2ace.cpp

|o*seqconv/gbtoace/gberr.cpp

|o*seqconv/gbtoace/gberr.h

|o*seqconv/gbtoace/gbfn.cpp

|o*seqconv/gbtoace/gbfn.h

|o*seqconv/gbtoace/gbseq.cpp

|o*seqconv/gbtoace/gbseq.h

|o*seqconv/gbtoace/gdna2a.cpp

|o*seqconv/gbtoace/gprt2a.cpp

|o*seqconv/gbtoace/head.cpp

|o*seqconv/gbtoace/head.h

|o*seqconv/gbtoace/pfeature.cpp

|o*seqconv/gbtoace/pfeature.h

|o*seqconv/gbtoace/README

|o*seqconv/gbtoace/ref.cpp

|o*seqconv/gbtoace/ref.h

|o*seqconv/gbtoace/Reference.cpp

|o*seqconv/gbtoace/reference.h

|o*seqconv/gbtoace/Reference.h

|o*seqconv/gbtoace/Refreader.cpp

|o*seqconv/gbtoace/Refreader.h

|o*seqconv/gbtoace/seqinfo.cpp

|o*seqconv/gbtoace/seqinfo.h

|o*seqconv/gbtoace/test.cpp

|o*seqconv/gbtoace/vref.cpp

|o*seqconv/gbtoace/vref.h

|o*seqconv/sptoace/book.cpp

|o*seqconv/sptoace/book.h

|o*seqconv/sptoace/dbtime.cpp

|o*seqconv/sptoace/dbtime.h

|o*seqconv/sptoace/parsererror.h

|o*seqconv/sptoace/parsesw.cpp

|o*seqconv/sptoace/prt.cpp

|o*seqconv/sptoace/prt.h

|o*seqconv/sptoace/refloc.cpp

|o*seqconv/sptoace/refloc.h

|o*seqconv/sptoace/test.cpp

|o*seqconv/sptoace/time.cpp

|o*seqconv/sptoace/time.h

|o*seqconv/sptoace/util.cpp

|o*seqconv/sptoace/util.h

|o*sim4cpp/align.cpp

|o*sim4cpp/align.h

|o*sim4cpp/args.cpp

|o*sim4cpp/args.h

|o*sim4cpp/dbformat.cpp

|o*sim4cpp/discrim.cpp

|o*sim4cpp/discrim.h

|o*sim4cpp/dna.cpp

|o*sim4cpp/dna.h

|o*sim4cpp/encoding.cpp

|o*sim4cpp/encoding.h

|o*sim4cpp/kzseq.cpp

|o*sim4cpp/kzseq.h

|o*sim4cpp/libc.h

|o*sim4cpp/misc.cpp

|o*sim4cpp/misc.h

|o*sim4cpp/prnt.cpp

|o*sim4cpp/prnt.h

|o*sim4cpp/psublast.h

|o*sim4cpp/sim4.cpp

|o*sim4cpp/sim4.h

|o*sim4cpp/sim4b1.cpp

|o*sim4cpp/sim4b1.h

|o*sim4cpp/sim4main.cpp

|o*sim4cpp/splice.cpp

|o*sim4cpp/splice.h

|o*sim4cpp/strformat.cpp

|o*sim4cpp/strformat.h

|o*sim4cpp/types.h

|o*sim4cpp/Xtend1.cpp

|o*sim4cpp/Xtend1.h

|o*util/codon.h

|o*util/dbinfo.cpp

|o*util/dbinfo.h

|o*util/dynaln.h

|o*util/FPGModel.h

|o*util/GModel.h

|o*util/GrishinDistance.cpp

|o*util/matrix.h

|o*util/Model.h

|o*util/stddev.h

|o*util/strformat.cpp

|o*util/strformat.h

|o*util/test.cpp

|o*util/testlib.cpp

|o*web/README

|o*web/README.ticket

|o*web/cgi/phpinfo.php

|o*web/ec/README

|\*web/jobsearch/README

o+Directory Hierarchy

\*File Members