trlsdeclump.c File Reference

#include <stdio.h>
#include "seqaln.h"

Functions
	trlsdeclump (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

---

Function Documentation

trlsdeclump	(	struct SEQALN_SEQUENCE *	seq1,
		struct SEQALN_SEQUENCE*	seq2,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_CONSTANTS::alpha, SEQALN_RESULTS::bestS, SEQALN_RESULTS::bestSi, SEQALN_RESULTS::bestSj, SEQALN_CONSTANTS::Debug, SEQALN_CONSTANTS::deltafn, gap(), SEQALN_RESULTS::linbits, markseq(), max, max3(), SEQALN_RESULTS::S, and SEQALN_IO::STDOUT.

Referenced by main().