uniqueshortseq.cpp File Reference

#include <iostream>
#include <fstream>
#include <vector>
#include <cstring>
#include <cstdlib>
#include <algorithm>

Functions
void	weedoutBadSeq (const string &infile, vector< char * > &allseq)
void	readSeqFromFile (const string &infile, vector< char * > &seqs)
void	eliminateSameAndSimple (vector< char * > &v)
void	removeSimple (vector< char * > &seq)
bool	isRepeat (const char *str)
int	main (int argc, char *argv[])
bool	compareCharPtr (const char *c1, const char *c2)
bool	samestr (const char *c1, const char *c2)

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Function Documentation

bool compareCharPtr	(	const char *	c1,
		const char *	c2
	)

Referenced by eliminateSameAndSimple().

void eliminateSameAndSimple

(

vector< char * > &

v

)

References compareCharPtr(), isRepeat(), and samestr().

Referenced by main().

bool isRepeat

(

const char *

str

)

there is not so many simple reads

References length.

Referenced by eliminateSameAndSimple(), and removeSimple().

int main	(	int	argc,
		char *	argv[]
	)

References eliminateSameAndSimple(), readSeqFromFile(), removeSimple(), and weedoutBadSeq().

void readSeqFromFile	(	const string &	infile,
		vector< char * > &	seqs
	)

References ifstream().

Referenced by main().

void removeSimple

(

vector< char * > &

seq

)

the seq shold have been cleared for testing, I am starting from the intermediate results.

References isRepeat().

Referenced by main().

bool samestr	(	const char *	c1,
		const char *	c2
	)

Referenced by eliminateSameAndSimple().

void weedoutBadSeq	(	const string &	infile,
		vector< char * > &	allseq
	)

References good, and ifstream().

Referenced by main().